RDoQ Gallery

RDoQ Gallery



Below are the RDoQ output for some query scenarios that have arisen in the CNP (Consortium for Neuropsychiatric Phenomics). All of these examples can be generated using only RDoQ predefined term sets available in the query interface.


Patterns of Collaboration at BCNI in Cambridge


Even brief study gives insights about the impressive extent of collaborations among researchers at BCNI (click to regenerate):
figures/BCNI_people.png

Core Researchers in CNP in UCLA


Strong CNP collaborators (researchers having at least 10 common publications with another researcher) form a core network of the project (click to regenerate):
figures/Gallery_CNP_People.png

The same table after thresholding for the strongest associations:
figures/Gallery_CNP_People_thresholded.png
(Notice the slider in the lower left is set at a value of -5, eliminating associations below that threshold value.)
If we click the button near the bottom of the RDoQ page, a graph file in VUE format (after thresholding) is downloaded to our machine. VUE is a graph editor and information visualization tool; it is freely available (open source) and can be easily downloaded and installed on your machine.

This graph can be explored interactively with VUE, and has active links to PubMed:
figures/Gallery_CNP_People_Graph.png

Similarly, if we click the button near the bottom of the RDoQ page, a spreadsheet in .csv format is downloaded:
figures/Gallery_CNP_People_spreadsheet.png

RDoQ also has temporal controls, allowing it to make "movies" of the history of information in PubMed. For exampel, we can view the extent of UCLA collaboration at any point in the past 3 decades; We can use the temporal controls to view the extent of UCLA collaboration at any point in the past 3 decades; the following sequence shows the state in 1998, 2000, 2002, 2004, 2006, 2008:
figures/CNPin1998.png figures/CNPin2000.png figures/CNPin2002.png figures/CNPin2004.png figures/CNPin2006.png figures/CNPin2008.png

RDoQ also permits automated clustering of table entries; one result with this data looks like this:
figures/Gallery_CNP_People_clustered.png

By pressing the button, we obtain a file with the graph in VUE format (after thresholding); the graph can be explored interactively with VUE, and has active links to PubMed.

People in the UCLA Neuroscience Program vs. Neurotransmitter Receptors


With RDoQ we can find out which researchers at UCLA have published extensively on Neurotransmitter Receptors (click to regenerate):
figures/Gallery_UCLA_Neuroscience_IDP_vs_Neurotransmitter_Receptors_Threshold_15.png

Again, by pressing the button, we obtain a file containing a graph in VUE format (after thresholding); again, these graphs contain all links to PubMed, and with the VUE editor the graph can be exported to other formats, including HTML and PDF:
figures/Gallery_UCLA_Neuroscience_IDP_vs_Neurotransmitter_Receptors_Graph.png


We can immediately obtain a window containing an editable, thresholded version of this graph by pressing the button:
figures/Gallery_VUEapplet_UCLA_Neuroscience_IDP_vs_Neurotransmitter_Receptors.png


Acknowledgements




Output information here is provided "as is", and with no representation or warranty expressed or implied by any parties.



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